Error in library polca there is no package called polca 2. Make sure the package installed successfully, with a confirmation message. loc, . I am really new to R--coming from Python where it's normal not to get an output unless you ask for one, so I assumed it was the same I'm a newbie in R and as I'm following a script from another one, I'm in trouble for the fact I can't install (and recall) the "forecast" library. packages("xfun", type="binary") Tour Start here for a quick overview of the site Help Center Detailed answers to any questions you might have Meta Discuss the workings and policies of this site Estimates latent class and latent class regression models for polytomous outcome variables. poLCA is a software package for the estimation of latent class and latent class regression models for polytomous outcome variables, implemented in the R statistical computing environment. packages("qdap") It takes a while to donwload everything but the console fills up with all the downloads and at the end I get a message like this: Warning in install. You could try selecting a different mirror -- run chooseCRANmirror(), select a mirror close to you, and then run your code again. packages('assertthet') then `library(assertthat). I tried installing terra by itself but I am getting this error: installing the source packag I've built a report using some R script to transform some data imported from SQL server. the other packages ggplot needs to run properly). I am trying to install tidyverse package in order to use gather function in my script. Modified 7 years, 9 months ago. I'm a newbie in R and as I'm following a script from another one, I'm in trouble for the fact I can't install (and recall) the "forecast" library. Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company Hi@akhtar, It may happen that some libraries are not present in your RStudio. 959 on Windows 10 and trying to use the package poLCA. Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company You signed in with another tab or window. Then check that even though they may be the same version of R, they might be two different installations. RScriptExecutor I know this answer is late but in case is useful, here it is: 1. Help About FAQ I had the original issue that was posted, and tried install. poLCA is the rst R package to enable the user to estimate latent class models for manifest variables with any number of possible outcomes, and it is the only package that estimates latent class regression models with covariates (Linzer and Lewis, 2013; R Core I am really sorry for my stupidity as it was my first time posting any query here and thanks a lot for the suggestion. Maybe RStudio stuck it somewhere that RScript doesn't look. But what has been provided is completely insufficient to help, as what you are missing is what will help us solve the problem. 53. packages("keras"): “installation of package ‘cli’ had non-zero exit status”Warning message in install. csv(file. Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company Installation path not writeable, unable to update packages: foreign, spatial Warning messages: 1: In install. Problems like this can occur if/when a package (or one of its dep packages) cannot be installed in-place (e. Polytomous Setting nrep>1 automates the search for the global---rather than just a local---maximum of the log-likelihood function. This is likely because you're running Yosemite and when RStudio looks to install colorspace, it searches for it on the The latent classes are assumed to be nominal. What does a latent class analysis try to do? Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company This question was caused by a typo or a problem that can no longer be reproduced. We couldn't get CRAN to work with IIS. The reason for the error is the fact that the ggplot2 library is not installed in your computer. Seems like you might have updated dplyr further than the tidyverse version or something. The poLCA package is not capable of sampling weights, yet. installation of package ‘rlang’ had non-zero exit status. libPaths()), versionCheck = vI[[j]]): there is Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company Thanks for contributing an answer to Stack Overflow! Please be sure to answer the question. Before trying to fix that, though, you might try installing the binary (already compiled) version that's available — it's not that much older than the source version. - I installed shinyjs: install. On the right hand lower corner I pressed on Packages and then on update. This becomes more and more of a problem as nclass increases. Tried gRain, bnlearn and Rgraphviz for plotting. at org. At the end of the Deseq2 installation, it's writen for all the packages that it had non-zero exit status Fix the Error in library ggplot2 exception. Latent class analysis (also known as latent structure analysis) can be used to identify clusters of similar "types" of individuals or observations from multivariate categorical Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company Today we will learn how to fix error messages that you could find in your R development tool such as RStudio, Jupyter and others, when trying to invoke the tidyverse poLCA: Polytomous Variable Latent Class Analysis. I tried to install packages like ggplot2, tidyverse (with dependencies) so many times with R 4. 0 and since you are using a much older version you need to install a suitable RTools version from here There are likely dependencies to the ape package that are not installed. . Here is my code: library(scatterplot3d) library(MASS) library(poLCA) data <- read. 1335, but I keep getting the follow error: > install. The basic latent class model is a finite mixture model in which the component distributions are assumed to be I'm trying to install devtools on a new installation of R 3. This question is not reproducible or was caused by typos. packages : package ‘ggsn’ is not available for this version of R. I also tried solution from Mr Macro7 like this: step1: I had a similar issue for another package, and the easiest way to fix it was as follows(in RStudio): Close all open . 2. For management it is also helpful to know the index number of the card in the loop, and the total The poLCA package does not use any external sources. Based on the image you posted, it looks like something is going wrong when attempting to connect to the RStudio CRAN mirror. 15 and 3. packages() : installation of package ‘Rsamtools’ had non-zero exit status 3: In install. This solved a lot of problems for us. libPaths()), versionCheck = vI[[j]]): there There is no output, but it gets that green bar next to the line instead of the red one. It refreshes fine on the desktop mode, however once This worked for me. You then installed it with . Closed 7 years ago . Help About FAQ Recent in Data Analytics. Note. yes, I have installed other libraries earlier but ever since I tried installing caTools I could not install anything else since then. The problem got solved. When you run a latent class analysis in poLCA it generates a value for each respondent giving their posterior probability of 'belonging' to each latent class. packages : cannot remove prior installation of package ‘reshape2’ Recent in Data Analytics. /programfiles (x86)/ and the 64-bit architecture should be installed on . Content Search Users Tags Badges. choose(), Error in library(readr) : there is no package called 'readr' This means that you don't have the package readr installed on your computer. If you have that R library installed, it'll make pdf images of the sequence motif found at the start codon. – MrFlick Overview. Perhaps stupid question, but I have to ask: are there any warnings (even seemingly innocuous) in the installation? (Often questions about installation problems either (a) include all the text, and we can see where it looks odd, or (b) does not include any of the intermediate warnings/errors, in which case it's clear the asker does not know to read the Thanks for contributing an answer to Stack Overflow! Please be sure to answer the question. I tried installing terra by itself but I am getting this error: installing the source packag Hi Guys, I am new to RStudio. In addition, I also updated Rstudio. packages("kableExtra", I had the same problem a few months ago. Provide details and share your research! But avoid . r and . Recent in Data Analytics. java:80) at org. 6 on a Windows 10 machine inside of RStudio 1. I've already read other posts but it seems no solu I am applying LCA analysis with PoLCA R package, but the analysis not resulted since three days (it did not find the best model yet) and occasionally it gives the following error: "ALERT: iterations increase the nrep= argument in the call, so you the probability of the model not finding maximum likelihood by chance -bad random initial Installing of dependencies is not recursive, i. packages("devtools"). packages() : installation of package ‘GenomicAlignments’ had non-zero exit status 4: Traffic: 418 users visited in the last hour. As you show in your output, it does mention that binary versions are available (although older). OK, as a followup to this: I came across a post on stackoverflow from Sep 2020 where a person provided a solution: install. I'm running R Studio Version 1. How to Use rbind and cbind on Single Dataframe Jul 22, 2022 ; Speed up the loop operation in R Jul 20, 2022 ; Create data frame from function in R Jul 9, 2022 ; All Levels of a Factor in a Model Matrix in R Jul 9, 2022 ; Extracting specific columns from a data frame Jul 6, 2022 poLCA is a software package for the estimation of latent class and latent class regression models for polytomous outcome variables, implemented in the R statistical computing environment. Commented Mar 24, 2019 at 1:19. I have a problem with installing package "semPlot". 6. R. Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company When you type in install. In the next R session, this step has not to be done again. I have tried in R 2. Asking for help, clarification, or responding to other answers. 4. Then check the output of . After downloading the most stable version of R (3. Imported packages: Importing packages allows developers to leverage existing code and functionalities without having to reinvent the wheel. Often this means you need to install After the installation, when I did library (psych) it gave me an error saying that the package was not installed. It is there to indicate that there might be some problems (but generally not unless the newer version of R has underwent a major enough change to break backwards compatibility). Dear Martin Morgan: Thanks a lot for your help. 0 and library them but to no avail. 25\home$\justinfacteau\My Documents\R\R-3. Now, we can apply the library function to load the caret package: Thanks for contributing an answer to Stack Overflow! Please be sure to answer the question. Commented Mar 24, 2019 at 2:24. packages("reshape2"), it says package ‘reshape2’ successfully unpacked and MD5 sums checked Warning in install. I've already read other posts but it seems no solu I want to use 'arulesViz' to visualize association rule, but when I load the package, r give me an error: >library(arulesViz) Error: package or namespace load failed for ‘arulesViz’ in loadNamespace(j <- i[[1L]], c(lib. New replies are no longer allowed. I believe that warning is usually displayed if there is a mismatch between the version of R you are running and the version for which the package was built. Now problem solved. rmd, . For management it is also helpful to know the index number of the card in the loop, and the total number of cards in the loop. – Chthonyx. Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company also installing the dependencies ‘cli’, ‘testthat’, ‘processx’, ‘tensorflow’ Warning message in install. packages('caret', dependencies = TRUE) This will automatically download package e1071 as well as ellipse and many other package dependancies that arise in using caret. Manually deleting the dplyr folder and then reinstalling it worked for me. Very likely there was an error when installing the package. , ready to run, takes 10 seconds to install) and source (needs to be converted to binary; this requires developer tools like xcode and can take substantially more time; if your disk space is low, this could also sometimes cause problems). packages("car",dependencies=TRUE) then install all the packages that when loading car I was asked for like haven, foreign, etc. Latent class analysis (also known as latent structure analysis) can be used to identify clusters of similar "types" of individuals or observations from multivariate categorical You're on Windows and it has a little problem with trying to update packages that involve compiled code (such as readr and Rcpp). It seems to install fine, but when I try to load it, I keep running into this error: > library(sf) Error: package or namespace load failed for ‘sf’ in dyn. e. hellbender. This topic was automatically closed 7 days after the last reply. - Open a terminal and run: sudo R. It will come by default through r-core. /programfiles/ Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company Visit the blog Thanks for contributing an answer to Stack Overflow! Please be sure to answer the question. poLCA returns the parameter estimates corresponding to the model with Thanks for contributing an answer to Stack Overflow! Please be sure to answer the question. To resolve this reinstall the package with this command: install. I think the lib_loc option is the best in most circumstances. How to Use rbind and cbind on Single Dataframe Jul 22, 2022 ; Speed up the loop operation in R Jul 20, 2022 ; Create data frame from function in R Jul 9, 2022 ; All Levels of a Factor in a Model Matrix in R Jul 9, 2022 ; Extracting specific columns from a data frame Jul 6, 2022 I noticed that whenever I type install. I believe that in this case an answer is not necessary. I have successfully installed the package after removed the file. , when a package is being used, re-installing/updating may not work). – Kevin Ushey In my case, dplyr hadn't installed completely the first time I tried install. utils::install. This question was caused by a typo or a problem that can no longer be reproduced. table failed due to a problem compiling the package from source. as a better fix, I'll have a look why this dependency version isn't being automatically upgraded upon Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company Do you want to install from sources the packages which need compilation? The easiest solution, update your R version so you have access to precompiled binaries and answer "no" to this question. I checked a bit, and people solved this issue by removing file If probs. However, I found myself in a situation where in a conda environment on RHEL I needed to be able to access a number of custom-made R packages in system libraries from within python using rpy2. updating the vctrs package should fix your issue, it's a dependency of e. Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company package ‘caret’ successfully unpacked and MD5 sums checked Warning in install. packages("semPlot", dependencies=TRUE) but it dose not work. Error is like this. 3. rnw files. It is therefore highly advisable to run poLCA multiple times until you are relatively You signed in with another tab or window. 1 system level package library instead, if you want you could move your packages from the old library to the new one (just be sure not to overwrite the existing base R packages) and then update your packages with I have the same problem, but even if I install the survival packages, it still doesn't work. dplyr, which is a dependency of microViz. Luckily, this is very easy to do! You signed in with another tab or window. Closed. While similar questions may be on-topic here, this one was resolved in a way less likely to help future readers. This is distinct to getting the attributes of an object, which is what you use attr for. 1\library\00LOCK\caret: No such file or directory The downloaded binary packages are in We have decided to switch to 'Microsoft R Open' (MRAN) instead of R for Windows (CRAN). Where did RStudio install optparse?Get that from packageDescription("optparse"). packages() : installation of package ‘Rhtslib’ had non-zero exit status 2: In install. I am trying to extract WorldClim data using the raster function but it says that there is no package called 'terra' installed. However, since some packages are laoded, R does not seem able to update them. libPaths()), versionCheck = vI[[i]]): there is no package called ‘igraph’ I tried install. You switched accounts on another tab or window. for more information please check out the CRAN package page for caret here caret package info Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company Visit the blog I think the issue is that RStudio loads rmarkdown as well as knitr on start. 1 @TylerRinker After I No package called rodbc [closed] Ask Question Asked 7 years, 9 months ago. packages : problem creating directory \\10. broadinstitute. packages('remotes') Installing package into ‘\\pna401f7070 Traffic: 601 users visited in the last hour. packages("BiocManager") BiocManager::install("Biobase") Then try again Thanks for contributing an answer to Stack Overflow! Please be sure to answer the question. Please note that this card does not necessarily have to represent only one item. Run the install command again and look for the error. By the way: There is also another package for latent class models called „lcmm“ and another one named „mclust„. 3. packages("ape", dependencies = T) which will automatically install any other package that ape relies on. While similar Use sessionInfo() to tell is which versions of these packages you are using. ESP32 is a series of low cost, low power system on a chip microcontrollers with integrated Wi-Fi and dual-mode Bluetooth. If you try to install that package you'll likely get another error. The question is not related to R programming and there are several duplicates of very similar cases. libPaths()), versionCheck = vI[[j]]): there is no package @evan, This was from 10 years ago, but in crazy event it is helpful, this is what worked for me: There is now a tiny blurb in the rstudio manual (all the way at the bottom) that describes how renv changes the R search path, and offers a way to override it using the utils package like so. dependencies of dependencies may not get included, and caret requires quite a few packages, so it only seems never ending but it's not. I am trying to build a Bayesian network model. 0. Thanks for contributing an answer to Stack Overflow! Please be sure to answer the question. Hi Lei, No worries. if you are okay with installing slightly older version you can then use install. Error: package or namespace load failed for ‘semPlot’ in loadNamespace(i, c(lib. Just installed an update of R and I am trying to install a few packages. Hi, I had a similar issue and then triggered the warning message when installing with "dependencies = T": Warning in install. Enhancements: Enhancements help developers expand the capabilities of their packages without starting from This is the complete console output: > install. However I am unable to install a suitable package. A barcode can also help. I think you can solve your problem doing the following: Hi everyone! I am new in R. Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company Thanks for contributing an answer to Stack Overflow! Please be sure to answer the question. Latent class analysis and latent class regression models for polytomous outcome variables. ERROR: there is no package called "shinydashboard" If I run an R session in a terminal, I can load the shinydashboard library, and I get a browser window with the dashboard if I copy+paste this code in the R session: Thanks for contributing an answer to Stack Overflow! Please be sure to answer the question. This topic was automatically closed 21 days after the last reply. I am getting the following message every time I try to install the package: * installing *source* package ‘cu I had the original issue that was posted, and tried install. Try restarting a fresh vanilla session, run install. packages("plm", type = "binary"). Most important are the source process and the destination process. If you will be using the caret package regularly try: install. The poLCA package has no imported packages. I just typed dplyr into the Windows start menu, which pulled up the correct folder in the R library, then I just hit right click Note that you have to install a package only once. You have to add ggplot2 You should check whether there are such extractor functions provided by the poLCA package and use them if possible; that way, you're not making assumptions about the structure of the model object that might be broken in the future. g. Thanks a lot !! Well that is not the complete output, but I think I know what your problem is, RTools40 is for being used with R >= 4. Both models can be called using a single simple command line. getScriptException(RScriptExecutor. libPaths() in your Rscript environment and your RStudio environment. In this case, the issue appears to be with the colorspace package not being able to installed. I'm a newbie to R with a question about poLCA. packages("ggplot2") into the console, RStudio is pre-programmed to also install the dependencies (i. packages("keras"): “installation of package ‘testthat’ had non-zero exit status”Warning message in install This topic was automatically closed 21 days after the last reply. Latent class analysis (also known as latent structure analysis) can be used to identify clusters of similar "types" of individuals or observations from multivariate categorical Thanks for contributing an answer to Stack Overflow! Please be sure to answer the question. 4), first, I install. packages("gtable", dependencies = TRUE) WARNING: Rtools is required to build R packages but is not currently installed. packages : installation of package 'mclust' had non-zero exit status – library(ggplot2) Error: package or namespace load failed for ‘ggplot2’ in loadNamespace(j &lt;- i[[1L]], c(lib. I have cleared all mass from the past. How to Use rbind and cbind on Single Dataframe Jul 22, 2022 ; Speed up the loop operation in R Jul 20, 2022 ; Create data frame from function in R Jul 9, 2022 ; All Levels of a Factor in a Model Matrix in R Jul 9, 2022 ; Extracting specific columns from a data frame Jul 6, 2022 Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; I've installed qdap: install. 5. RScriptExecutor. On windows 10 the 32-bit architecture should be installed on path . You know, I don't really know, since I don't use jupyter notebooks all that often. Actually, in my system "rpart" package already installed. poLCA uses EM and Newton-Raphson algorithms to maximize the latent class model log-likelihood function. The ESP32 series employs either a Tensilica Xtensa LX6, Xtensa LX7 or a RiscV processor, and both dual-core and single-core variations are available. packages : installation of package 'ks' had non-zero exit status and Warning in install. Then you fix that one and work back up the path to install the one needed. – Tyler Rinker. Formatting Code: the Basics All code or console output you include in your posts should be formatted properly. if (!require("BiocManager", quietly = TRUE)) install. packages("hms") or via rstudio interface: packages -> install and type in "hms" also try this command: install. 2 Following are the There is little information needed on a POLCA card. Specifically i'd be interested in the version of tidyverse, glue and dplyr. Reload to refresh your session. it seems kableExtra depends on the package "hms" so try install it before with: install. I am trying to use the Plotrix library. packages("dplyr") and, for some reason, refused to be overwritten when I tried to reinstall it. Install the Biobase package. There is little information needed on a POLCA card. Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company Again, thank you very much Mr andresrcs and really appreciate it. You signed in with another tab or window. But its not showing anything when i am trying to install again. You signed out in another tab or window. The seqLogo thing isn't essential, so you can just ignore that. Basically, if those packages are loaded, you cannot update them; and there's no way to unload them. packages("shinyjs", dependencies=TRUE) On Windows each major R version has its own system level package library, I recommend you to use the corresponding R 3. I attempted that but got the same error: there is no package called 'assertthat'. I get the following message all ending with 'there is no package called zip' Error: package or namespace load failed for ‘ggpubr’ in loadNamespace(j <- i[[1L]], c(lib. But I am (plotrix) : there is no package called ‘plotrix’ I'm trying to install sf on my new computer (M2 MacBook Air). 2 to 4. Also known as latent structure analysis. start is set to NULL (the default) when calling poLCA, then the function generates the starting values randomly in each run, typically rearranging the latent class Latent class analysis is an awesome and still underused (at least in social sciences) statistical method to identify unobserved groups of cases in your data. It is not currently accepting answers. If that goes well then restart and try installing tidyverse. If you have a query related to it or one of the replies, start a new topic and refer back with a link. it says the same for: Warning in install. Viewed 4k times Part of R Language Collective -2 . lo Packages come in two versions: binary (e. Each time I try to load these packages (ggpubr, semPlot) etc. Attributes in R are what I recently updated R from 3. utils. In my case, the solution was installing both versions of java (32-bit and 64-bit architecture). Hi @Berta!The attempt to install data. poLCA is a software package for the estimation of latent class models and latent class regression models for polytomous outcome variables, implemented in the R statistical computing environment. Depending on the starting parameters, this algorithm may only locate a local, rather than global, maximum. packages("dplyr") only to get the same issue with rlang. But you can install those libraries in your system as shown below. @Exocom Glad to hear that my comment has helped you. kqzjh zvik vvwsr jcvqb nafjbh muhrs wblrmo gkh khge qdq